ihm Schema
- Primary Key:
pdbid - Tables: 114
brief_summary
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| docid | bigint | |
| deposition_date | date | |
| release_date | date | |
| modification_date | date | |
| deposit_author | text[] | |
| citation_author | text[] | |
| citation_title | text[] | |
| citation_journal | text[] | |
| citation_year | integer[] | |
| citation_volume | text[] | |
| citation_author_pri | text[] | |
| citation_title_pri | text | |
| citation_journal_pri | text | |
| citation_year_pri | integer | |
| citation_volume_pri | text | |
| chain_type | text[] | |
| chain_type_ids | integer[] | |
| chain_number | integer | |
| chain_length | integer[] | |
| pdbx_descriptor | text | |
| struct_title | text | |
| ligand | text[] | |
| exptl_method | text[] | |
| exptl_method_ids | integer[] | |
| biol_species | text | |
| host_species | text | |
| db_pubmed | text[] | |
| db_doi | text[] | |
| db_ec_number | text[] | |
| db_goid | text[] | |
| db_uniprot | text[] | |
| db_genbank | text[] | |
| db_embl | text[] | |
| db_pir | text[] | |
| db_emdb | text[] | |
| pdb_related | text[] | |
| keywords | text[] | |
| aaseq | text | |
| update_date | timestamp without time zone | |
| db_pfam | text[] | |
| plus_fields | jsonb |
atom_type
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| symbol | text |
audit_author
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| name | text | |
| pdbx_ordinal | integer |
audit_conform
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| dict_location | text | |
| dict_name | text | |
| dict_version | text |
chem_comp
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| formula | text | |
| formula_weight | double precision | |
| id | text | |
| mon_nstd_flag | text | |
| name | text | |
| type | text | |
| pdbx_synonyms | text |
citation
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| country | text | |
| id | text | |
| journal_abbrev | text | |
| journal_id_ASTM | text | |
| journal_id_CSD | text | |
| journal_id_ISSN | text | |
| journal_issue | text | |
| journal_volume | text | |
| page_first | text | |
| page_last | text | |
| title | text | |
| year | integer | |
| pdbx_database_id_DOI | text | |
| pdbx_database_id_PubMed | integer |
citation_author
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| citation_id | text | |
| name | text | |
| ordinal | integer |
database_2
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| database_id | text | |
| database_code | text | |
| pdbx_database_accession | text | |
| pdbx_DOI | text |
entity
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| details | text | |
| formula_weight | double precision | |
| id | text | |
| src_method | text | |
| type | text | |
| pdbx_description | text | |
| pdbx_number_of_molecules | integer |
entity_name_com
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entity_id | text | |
| name | text |
entity_name_sys
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entity_id | text | |
| name | text |
entity_poly
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entity_id | text | |
| nstd_chirality | text | |
| nstd_linkage | text | |
| nstd_monomer | text | |
| type | text | |
| type_details | text | |
| pdbx_strand_id | text | |
| pdbx_seq_one_letter_code | text | |
| pdbx_seq_one_letter_code_can | text | |
| pdbx_sequence_evidence_code | text |
entity_poly_seq
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entity_id | text | |
| hetero | text | |
| mon_id | text | |
| num | integer |
entity_src_gen
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entity_id | text | |
| gene_src_common_name | text | |
| gene_src_genus | text | |
| pdbx_gene_src_scientific_name | text | |
| pdbx_host_org_strain | text | |
| host_org_common_name | text | |
| pdbx_host_org_scientific_name | text | |
| pdbx_gene_src_ncbi_taxonomy_id | text | |
| pdbx_host_org_ncbi_taxonomy_id | text | |
| pdbx_src_id | integer | |
| pdbx_alt_source_flag | text |
entry
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | text |
ihm_2dem_class_average_fitting
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| restraint_id | integer | |
| model_id | integer | |
| cross_correlation_coefficient | double precision | |
| rot_matrix11 | double precision | |
| rot_matrix21 | double precision | |
| rot_matrix31 | double precision | |
| rot_matrix12 | double precision | |
| rot_matrix22 | double precision | |
| rot_matrix32 | double precision | |
| rot_matrix13 | double precision | |
| rot_matrix23 | double precision | |
| rot_matrix33 | double precision | |
| tr_vector1 | double precision | |
| tr_vector2 | double precision | |
| tr_vector3 | double precision |
ihm_2dem_class_average_restraint
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| dataset_list_id | integer | |
| number_raw_micrographs | integer | |
| pixel_size_width | double precision | |
| pixel_size_height | double precision | |
| image_resolution | double precision | |
| image_segment_flag | text | |
| number_of_projections | integer | |
| struct_assembly_id | integer | |
| details | text |
ihm_3dem_restraint
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| dataset_list_id | integer | |
| model_id | integer | |
| struct_assembly_id | integer | |
| fitting_method | text | |
| number_of_gaussians | integer | |
| map_segment_flag | text | |
| cross_correlation_coefficient | double precision | |
| fitting_method_citation_id | text | |
| details | text |
ihm_chemical_component_descriptor
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| chemical_name | text | |
| common_name | text | |
| auth_name | text | |
| smiles | text | |
| smiles_canonical | text | |
| inchi | text | |
| inchi_key | text | |
| details | text |
ihm_cross_link_list
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| group_id | integer | |
| entity_description_1 | text | |
| entity_description_2 | text | |
| entity_id_1 | text | |
| entity_id_2 | text | |
| comp_id_1 | text | |
| comp_id_2 | text | |
| seq_id_1 | integer | |
| seq_id_2 | integer | |
| linker_type | text | |
| linker_chem_comp_descriptor_id | integer | |
| dataset_list_id | integer | |
| details | text |
ihm_cross_link_pseudo_site
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| restraint_id | integer | |
| cross_link_partner | integer | |
| pseudo_site_id | integer | |
| model_id | integer |
ihm_cross_link_restraint
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| group_id | integer | |
| entity_id_1 | text | |
| entity_id_2 | text | |
| asym_id_1 | text | |
| asym_id_2 | text | |
| comp_id_1 | text | |
| comp_id_2 | text | |
| seq_id_1 | integer | |
| seq_id_2 | integer | |
| atom_id_1 | text | |
| atom_id_2 | text | |
| restraint_type | text | |
| conditional_crosslink_flag | text | |
| model_granularity | text | |
| distance_threshold | double precision | |
| psi | double precision | |
| sigma_1 | double precision | |
| sigma_2 | double precision | |
| pseudo_site_flag | text |
ihm_cross_link_result
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| restraint_id | integer | |
| ensemble_id | integer | |
| num_models | integer | |
| model_group_id | integer | |
| distance_threshold | double precision | |
| median_distance | double precision |
ihm_cross_link_result_parameters
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| restraint_id | integer | |
| model_id | integer | |
| psi | double precision | |
| sigma_1 | double precision | |
| sigma_2 | double precision |
ihm_data_transformation
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| rot_matrix11 | double precision | |
| rot_matrix21 | double precision | |
| rot_matrix31 | double precision | |
| rot_matrix12 | double precision | |
| rot_matrix22 | double precision | |
| rot_matrix32 | double precision | |
| rot_matrix13 | double precision | |
| rot_matrix23 | double precision | |
| rot_matrix33 | double precision | |
| tr_vector1 | double precision | |
| tr_vector2 | double precision | |
| tr_vector3 | double precision |
ihm_dataset_external_reference
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| dataset_list_id | integer | |
| file_id | integer |
ihm_dataset_group
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| name | text | |
| application | text | |
| details | text |
ihm_dataset_group_link
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| dataset_list_id | integer | |
| group_id | integer |
ihm_dataset_list
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| data_type | text | |
| details | text | |
| database_hosted | text |
ihm_dataset_related_db_reference
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| dataset_list_id | integer | |
| db_name | text | |
| accession_code | text | |
| version | text | |
| details | text |
ihm_derived_angle_restraint
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| group_id | integer | |
| feature_id_1 | integer | |
| feature_id_2 | integer | |
| feature_id_3 | integer | |
| group_conditionality | text | |
| restraint_type | text | |
| angle_threshold_mean | double precision | |
| angle_threshold_esd | double precision | |
| dataset_list_id | integer |
ihm_derived_dihedral_restraint
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| group_id | integer | |
| feature_id_1 | integer | |
| feature_id_2 | integer | |
| feature_id_3 | integer | |
| feature_id_4 | integer | |
| group_conditionality | text | |
| restraint_type | text | |
| dihedral_threshold_mean | double precision | |
| dihedral_threshold_esd | double precision | |
| dataset_list_id | integer |
ihm_derived_distance_restraint
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| group_id | integer | |
| feature_id_1 | integer | |
| feature_id_2 | integer | |
| group_conditionality | text | |
| random_exclusion_fraction | double precision | |
| distance_lower_limit | double precision | |
| distance_upper_limit | double precision | |
| distance_upper_limit_esd | double precision | |
| probability | double precision | |
| restraint_type | text | |
| distance_threshold_mean | double precision | |
| distance_threshold_esd | double precision | |
| dataset_list_id | integer |
ihm_ensemble_info
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| ensemble_id | integer | |
| ensemble_name | text | |
| post_process_id | integer | |
| model_group_id | integer | |
| model_group_superimposed_flag | text | |
| ensemble_clustering_method | text | |
| ensemble_clustering_feature | text | |
| num_ensemble_models | integer | |
| num_ensemble_models_deposited | integer | |
| ensemble_precision_value | double precision | |
| ensemble_file_id | integer | |
| details | text | |
| sub_sample_flag | text | |
| sub_sampling_type | text |
ihm_ensemble_sub_sample
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| name | text | |
| ensemble_id | integer | |
| num_models | integer | |
| num_models_deposited | integer | |
| file_id | integer |
ihm_entity_poly_segment
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| entity_id | text | |
| seq_id_begin | integer | |
| seq_id_end | integer | |
| comp_id_begin | text | |
| comp_id_end | text |
ihm_entry_collection
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | text | |
| details | text |
ihm_entry_collection_mapping
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| collection_id | text | |
| entry_id | text |
ihm_epr_restraint
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| ordinal_id | integer | |
| dataset_list_id | integer | |
| model_id | integer | |
| fitting_particle_type | text | |
| fitting_method | text | |
| fitting_method_citation_id | text | |
| fitting_state | text | |
| fitting_software_id | integer | |
| chi_value | double precision | |
| details | text |
ihm_external_files
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| reference_id | integer | |
| file_path | text | |
| file_format | text | |
| content_type | text | |
| file_size_bytes | double precision | |
| details | text |
ihm_external_reference_info
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| reference_id | integer | |
| reference_provider | text | |
| reference_type | text | |
| reference | text | |
| refers_to | text | |
| associated_url | text | |
| details | text |
ihm_feature_list
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| feature_id | integer | |
| feature_type | text | |
| entity_type | text | |
| details | text |
ihm_geometric_object_axis
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| object_id | integer | |
| axis_type | text |
ihm_geometric_object_center
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| xcoord | double precision | |
| ycoord | double precision | |
| zcoord | double precision |
ihm_geometric_object_distance_restraint
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| object_id | integer | |
| feature_id | integer | |
| object_characteristic | text | |
| restraint_type | text | |
| harmonic_force_constant | double precision | |
| group_conditionality | text | |
| distance_lower_limit | double precision | |
| distance_upper_limit | double precision | |
| distance_probability | double precision | |
| dataset_list_id | integer | |
| details | text |
ihm_geometric_object_half_torus
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| object_id | integer | |
| thickness_th | double precision | |
| section | text |
ihm_geometric_object_list
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| object_id | integer | |
| object_type | text | |
| object_name | text | |
| object_description | text |
ihm_geometric_object_plane
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| object_id | integer | |
| plane_type | text | |
| transformation_id | integer |
ihm_geometric_object_torus
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| object_id | integer | |
| center_id | integer | |
| transformation_id | integer | |
| major_radius_R | double precision | |
| minor_radius_r | double precision |
ihm_geometric_object_transformation
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| rot_matrix11 | double precision | |
| rot_matrix21 | double precision | |
| rot_matrix31 | double precision | |
| rot_matrix12 | double precision | |
| rot_matrix22 | double precision | |
| rot_matrix32 | double precision | |
| rot_matrix13 | double precision | |
| rot_matrix23 | double precision | |
| rot_matrix33 | double precision | |
| tr_vector1 | double precision | |
| tr_vector2 | double precision | |
| tr_vector3 | double precision |
ihm_hdx_restraint
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| feature_id | integer | |
| protection_factor | double precision | |
| dataset_list_id | integer | |
| details | text |
ihm_hydroxyl_radical_fp_restraint
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| entity_id | text | |
| asym_id | text | |
| comp_id | text | |
| seq_id | integer | |
| fp_rate | double precision | |
| fp_rate_error | double precision | |
| log_pf | double precision | |
| log_pf_error | double precision | |
| predicted_sasa | double precision | |
| dataset_list_id | integer | |
| software_id | integer |
ihm_interface_residue_feature
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| ordinal_id | integer | |
| feature_id | integer | |
| binding_partner_entity_id | text | |
| binding_partner_asym_id | text | |
| dataset_list_id | integer | |
| details | text |
ihm_kinetic_rate
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| transition_rate_constant | double precision | |
| scheme_connectivity_id | integer | |
| dataset_group_id | integer | |
| external_file_id | integer |
ihm_localization_density_files
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| file_id | integer | |
| ensemble_id | integer | |
| entity_id | text | |
| entity_poly_segment_id | integer | |
| asym_id | text |
ihm_model_group
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| name | text | |
| details | text |
ihm_model_group_link
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| model_id | integer | |
| group_id | integer |
ihm_model_list
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| model_id | integer | |
| model_name | text | |
| assembly_id | integer | |
| protocol_id | integer | |
| representation_id | integer |
ihm_model_representation
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| name | text | |
| details | text |
ihm_model_representation_details
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| representation_id | integer | |
| entity_poly_segment_id | integer | |
| entity_id | text | |
| entity_description | text | |
| entity_asym_id | text | |
| model_object_primitive | text | |
| starting_model_id | text | |
| model_mode | text | |
| model_granularity | text | |
| model_object_count | integer | |
| description | text |
ihm_model_representative
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| model_group_id | integer | |
| model_id | integer | |
| selection_criteria | text |
ihm_modeling_post_process
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| protocol_id | integer | |
| analysis_id | integer | |
| step_id | integer | |
| struct_assembly_id | integer | |
| dataset_group_id | integer | |
| type | text | |
| feature | text | |
| feature_name | text | |
| num_models_begin | integer | |
| num_models_end | integer | |
| script_file_id | integer | |
| software_id | integer | |
| details | text |
ihm_modeling_protocol
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| num_steps | integer | |
| protocol_name | text | |
| details | text |
ihm_modeling_protocol_details
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| protocol_id | integer | |
| step_id | integer | |
| struct_assembly_id | integer | |
| dataset_group_id | integer | |
| struct_assembly_description | text | |
| step_name | text | |
| step_method | text | |
| num_models_begin | integer | |
| num_models_end | integer | |
| multi_scale_flag | text | |
| multi_state_flag | text | |
| ordered_flag | text | |
| ensemble_flag | text | |
| script_file_id | integer | |
| software_id | integer | |
| description | text |
ihm_multi_state_model_group_link
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| state_id | integer | |
| model_group_id | integer |
ihm_multi_state_modeling
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| state_id | integer | |
| state_group_id | integer | |
| population_fraction | double precision | |
| state_type | text | |
| state_name | text | |
| experiment_type | text | |
| details | text |
ihm_multi_state_scheme
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| name | text | |
| details | text |
ihm_multi_state_scheme_connectivity
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| scheme_id | integer | |
| begin_state_id | integer | |
| end_state_id | integer | |
| dataset_group_id | integer |
ihm_non_poly_feature
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| ordinal_id | integer | |
| feature_id | integer | |
| entity_id | text | |
| asym_id | text | |
| comp_id | text | |
| atom_id | text |
ihm_ordered_model
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| process_id | integer | |
| process_description | text | |
| edge_id | integer | |
| edge_description | text | |
| step_id | integer | |
| step_description | text | |
| ordered_by | text | |
| model_group_id_begin | integer | |
| model_group_id_end | integer |
ihm_poly_atom_feature
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| ordinal_id | integer | |
| feature_id | integer | |
| entity_id | text | |
| asym_id | text | |
| comp_id | text | |
| seq_id | integer | |
| atom_id | text |
ihm_poly_probe_conjugate
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| probe_id | integer | |
| position_id | integer | |
| chem_comp_descriptor_id | integer | |
| ambiguous_stoichiometry_flag | text | |
| dataset_list_id | integer |
ihm_poly_probe_position
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| entity_id | text | |
| entity_description | text | |
| seq_id | integer | |
| comp_id | text | |
| mutation_flag | text | |
| mut_res_chem_comp_id | text | |
| modification_flag | text | |
| mod_res_chem_comp_descriptor_id | integer | |
| description | text |
ihm_poly_residue_feature
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| ordinal_id | integer | |
| feature_id | integer | |
| entity_id | text | |
| asym_id | text | |
| comp_id_begin | text | |
| comp_id_end | text | |
| seq_id_begin | integer | |
| seq_id_end | integer | |
| residue_range_granularity | text | |
| rep_atom | text | |
| interface_residue_flag | text |
ihm_predicted_contact_restraint
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| group_id | integer | |
| entity_description_1 | text | |
| entity_description_2 | text | |
| entity_id_1 | text | |
| entity_id_2 | text | |
| asym_id_1 | text | |
| asym_id_2 | text | |
| comp_id_1 | text | |
| comp_id_2 | text | |
| seq_id_1 | integer | |
| seq_id_2 | integer | |
| rep_atom_1 | text | |
| rep_atom_2 | text | |
| distance_lower_limit | double precision | |
| distance_upper_limit | double precision | |
| probability | double precision | |
| restraint_type | text | |
| model_granularity | text | |
| dataset_list_id | integer | |
| software_id | integer |
ihm_probe_list
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| probe_id | integer | |
| probe_name | text | |
| reactive_probe_flag | text | |
| reactive_probe_name | text | |
| probe_origin | text | |
| probe_link_type | text | |
| probe_chem_comp_descriptor_id | integer | |
| reactive_probe_chem_comp_descriptor_id | integer |
ihm_pseudo_site
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| Cartn_x | double precision | |
| Cartn_y | double precision | |
| Cartn_z | double precision | |
| description | text |
ihm_related_datasets
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| dataset_list_id_derived | integer | |
| dataset_list_id_primary | integer | |
| transformation_id | integer |
ihm_relaxation_time
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| value | double precision | |
| unit | text | |
| amplitude | double precision | |
| dataset_group_id | integer | |
| external_file_id | integer | |
| details | text |
ihm_relaxation_time_multi_state_scheme
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| relaxation_time_id | integer | |
| scheme_id | integer |
ihm_residues_not_modeled
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| model_id | integer | |
| entity_description | text | |
| entity_id | text | |
| asym_id | text | |
| seq_id_begin | integer | |
| seq_id_end | integer | |
| comp_id_begin | text | |
| comp_id_end | text | |
| reason | text |
ihm_sas_restraint
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| dataset_list_id | integer | |
| model_id | integer | |
| struct_assembly_id | integer | |
| profile_segment_flag | text | |
| fitting_atom_type | text | |
| fitting_method | text | |
| fitting_state | text | |
| radius_of_gyration | double precision | |
| chi_value | double precision | |
| details | text |
ihm_sphere_obj_site
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| entity_id | text | |
| seq_id_begin | integer | |
| seq_id_end | integer | |
| asym_id | text | |
| Cartn_x | double precision | |
| Cartn_y | double precision | |
| Cartn_z | double precision | |
| object_radius | double precision | |
| rmsf | double precision | |
| model_id | integer |
ihm_starting_comparative_models
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| starting_model_id | text | |
| starting_model_auth_asym_id | text | |
| starting_model_seq_id_begin | integer | |
| starting_model_seq_id_end | integer | |
| template_auth_asym_id | text | |
| template_seq_id_begin | integer | |
| template_seq_id_end | integer | |
| template_sequence_identity | double precision | |
| template_sequence_identity_denominator | integer | |
| template_dataset_list_id | integer | |
| alignment_file_id | integer | |
| details | text |
ihm_starting_computational_models
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| starting_model_id | text | |
| script_file_id | integer | |
| software_id | integer |
ihm_starting_model_coord
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| ordinal_id | integer | |
| starting_model_id | text | |
| group_PDB | text | |
| id | integer | |
| type_symbol | text | |
| entity_id | text | |
| atom_id | text | |
| comp_id | text | |
| seq_id | integer | |
| asym_id | text | |
| Cartn_x | double precision | |
| Cartn_y | double precision | |
| Cartn_z | double precision | |
| B_iso_or_equiv | double precision |
ihm_starting_model_details
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| starting_model_id | text | |
| entity_id | text | |
| entity_description | text | |
| asym_id | text | |
| entity_poly_segment_id | integer | |
| starting_model_source | text | |
| starting_model_auth_asym_id | text | |
| starting_model_sequence_offset | integer | |
| dataset_list_id | integer | |
| description | text |
ihm_starting_model_seq_dif
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| entity_id | text | |
| asym_id | text | |
| seq_id | integer | |
| comp_id | text | |
| starting_model_id | text | |
| db_entity_id | text | |
| db_asym_id | text | |
| db_seq_id | integer | |
| db_comp_id | text | |
| details | text |
ihm_struct_assembly
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| name | text | |
| description | text |
ihm_struct_assembly_details
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| assembly_id | integer | |
| parent_assembly_id | integer | |
| entity_description | text | |
| entity_id | text | |
| asym_id | text | |
| entity_poly_segment_id | integer |
pdbx_audit_revision_details
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| ordinal | integer | |
| revision_ordinal | integer | |
| data_content_type | text | |
| provider | text | |
| type | text |
pdbx_audit_revision_history
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| ordinal | integer | |
| data_content_type | text | |
| major_revision | integer | |
| minor_revision | integer | |
| revision_date | date |
pdbx_branch_scheme
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entity_id | text | |
| asym_id | text | |
| mon_id | text | |
| num | integer | |
| pdb_asym_id | text | |
| pdb_seq_num | text | |
| pdb_mon_id | text | |
| auth_seq_num | text | |
| auth_mon_id | text |
pdbx_database_status
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| status_code | text | |
| entry_id | text | |
| recvd_initial_deposition_date | date | |
| deposit_site | text | |
| process_site | text |
pdbx_entity_branch
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entity_id | text | |
| type | text |
pdbx_entity_branch_descriptor
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entity_id | text | |
| descriptor | text | |
| type | text | |
| program | text | |
| program_version | text | |
| ordinal | integer |
pdbx_entity_branch_link
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| link_id | integer | |
| entity_id | text | |
| entity_branch_list_num_1 | integer | |
| entity_branch_list_num_2 | integer | |
| comp_id_1 | text | |
| comp_id_2 | text | |
| atom_id_1 | text | |
| leaving_atom_id_1 | text | |
| atom_id_2 | text | |
| leaving_atom_id_2 | text | |
| value_order | text |
pdbx_entity_branch_list
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entity_id | text | |
| comp_id | text | |
| num | integer |
pdbx_entity_nonpoly
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entity_id | text | |
| comp_id | text | |
| name | text |
pdbx_entity_poly_na_type
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entity_id | text | |
| type | text |
pdbx_entry_details
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entry_id | text | |
| sequence_details | text |
pdbx_nonpoly_scheme
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| asym_id | text | |
| entity_id | text | |
| mon_id | text | |
| pdb_strand_id | text | |
| ndb_seq_num | text | |
| pdb_seq_num | text | |
| auth_seq_num | text | |
| pdb_mon_id | text | |
| auth_mon_id | text |
pdbx_poly_seq_scheme
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| asym_id | text | |
| entity_id | text | |
| seq_id | integer | |
| hetero | text | |
| mon_id | text | |
| pdb_strand_id | text | |
| ndb_seq_num | integer | |
| pdb_seq_num | text | |
| auth_seq_num | text | |
| pdb_mon_id | text | |
| auth_mon_id | text | |
| pdb_ins_code | text |
pdbx_protein_info
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | text | |
| name | text | |
| num_per_asym_unit | integer |
pdbx_unobs_or_zero_occ_atoms
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| polymer_flag | text | |
| occupancy_flag | integer | |
| PDB_model_num | integer | |
| auth_asym_id | text | |
| auth_atom_id | text | |
| auth_comp_id | text | |
| auth_seq_id | text | |
| label_atom_id | text | |
| label_asym_id | text | |
| label_comp_id | text | |
| label_seq_id | integer |
pdbx_unobs_or_zero_occ_residues
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | integer | |
| polymer_flag | text | |
| occupancy_flag | integer | |
| PDB_model_num | integer | |
| auth_asym_id | text | |
| auth_comp_id | text | |
| auth_seq_id | text | |
| label_asym_id | text | |
| label_comp_id | text | |
| label_seq_id | integer |
software
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| citation_id | text | |
| classification | text | |
| description | text | |
| dependencies | text | |
| location | text | |
| name | text | |
| type | text | |
| version | text | |
| pdbx_ordinal | integer |
struct
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| entry_id | text | |
| title | text | |
| pdbx_structure_determination_methodology | text | |
| pdbx_descriptor | text | |
| pdbx_model_details | text | |
| pdbx_model_type_details | text | |
| pdbx_CASP_flag | text | |
| pdbx_details | text |
struct_asym
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| details | text | |
| entity_id | text | |
| id | text | |
| pdbx_modified | text | |
| pdbx_blank_PDB_chainid_flag | text | |
| pdbx_PDB_id | text | |
| pdbx_alt_id | text | |
| pdbx_type | text | |
| pdbx_order | integer |
struct_conn
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| conn_type_id | text | |
| id | text | |
| ptnr1_label_asym_id | text | |
| ptnr1_label_atom_id | text | |
| ptnr1_label_comp_id | text | |
| ptnr1_label_seq_id | integer | |
| ptnr1_auth_asym_id | text | |
| ptnr1_auth_comp_id | text | |
| ptnr1_auth_seq_id | text | |
| ptnr1_symmetry | text | |
| ptnr2_label_asym_id | text | |
| ptnr2_label_atom_id | text | |
| ptnr2_label_comp_id | text | |
| ptnr2_auth_asym_id | text | |
| ptnr2_auth_comp_id | text | |
| ptnr2_auth_seq_id | text | |
| ptnr2_symmetry | text | |
| pdbx_dist_value | double precision |
struct_conn_type
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| id | text |
struct_ref
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| db_code | text | |
| db_name | text | |
| details | text | |
| entity_id | text | |
| id | text | |
| pdbx_db_accession | text | |
| pdbx_db_isoform | text | |
| pdbx_seq_one_letter_code | text | |
| pdbx_align_begin | text | |
| pdbx_align_end | text |
struct_ref_seq
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| align_id | text | |
| db_align_beg | integer | |
| db_align_end | integer | |
| ref_id | text | |
| seq_align_beg | integer | |
| seq_align_end | integer |
struct_ref_seq_dif
| Column | Type | Description |
|---|---|---|
| pdbid | text | |
| align_id | text | |
| db_mon_id | text | |
| details | text | |
| mon_id | text | |
| seq_num | integer | |
| pdbx_seq_db_seq_num | text | |
| pdbx_ordinal | integer |