Getting Started
Install pdb-mine-builder, configure your environment, sync data from wwPDB mirrors, and load it into PostgreSQL.
Read the guide →Database Reference
Explore the database schemas, table definitions, and SQL query examples for structural biology data.
Browse schemas →SQL Examples
Browse 75+ ready-to-use SQL queries across 10 categories including structure search, chemical components, and RDKit similarity search.
Browse examples →Schema Search
Search across all schemas, tables, and columns in one place. Find columns by name, type, or description across pdbj, cc, vrpt, and more.
Search schemas →Table Relations
Select tables and visualize shared columns with interactive Mermaid ER diagrams. Explore implicit relationships across schemas.
Explore relations →