Nagae TsubasaNagae Tsubasa
- Yokohama City University, Graduate School of Medical Life Science, Laboratory of Structural Cell Biology — PhD student (2nd year)
- AIST, Artificial Intelligence Research Center, Machine Learning Research Team — Research Assistant
About
I work in bioinformatics and chemoinformatics, with a focus on structural bioinformatics — reading protein structures and their interactions through computation. Beyond machine learning and AI, I'm just as drawn to databases and data infrastructure. I also pour energy into building analysis tools and ChimeraX / VS Code extensions to make research faster and more fun.
Interests
- Structural bioinformatics
- Bioinformatics
- Chemoinformatics
- Machine learning & AI
- Databases
- Research tooling & extensions
Education
- 2019–2023Faculty of Agriculture, Shinshu University (B.S.)
- 2023–2025M.S. program, Graduate School of Medical Life Science, Yokohama City University
- 2025–2028Ph.D. program, Graduate School of Medical Life Science, Yokohama City University (expected)
Awards, grants & projects
- 2025データ思考イノベーティブ人材プログラム（SPRING）事業 採択（令和7年度）研究課題：タンパク質間相互作用調節因子の統合的理解に向けた AI 開発
- 2024AI駆動型データキュレーションによる持続可能な中分子相互作用統合データベースの開発統合化推進プログラム（JPMJND2401）／2024年6月〜（継続中）
- 2024学生優秀発表賞（ポスター発表の部）受賞日本薬学会第144年会（横浜）
- 2023効率的な分解誘導薬創成に向けた分子設計AIの基盤開発NEDO先導研究プログラム（1228013）／2023年9月〜2024年3月
Software
- zsasa2026
A high-performance SASA (solvent-accessible surface area) calculator implemented in Zig.